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| You want to... | Do this... | | :--- | :--- | | See crystal types | Add Common Neighbor Analysis | | Delete water molecules | Add Select Type (select type ID) > Delete Selected Particles | | Measure distance between two atoms | Utilities (right side) > Measure | | Make a movie | File > Export Animation | | Color by velocity | Color coding > Property = "Velocity" |

VMD (free, less UI-friendly), ParaView (more generic, less specialized). ovito top

What is the main you need to calculate (e.g., density, stress, or just visualization)? | You want to

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